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Investigation
Antibiotic Resistance
Research Lines
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B) Study of the distribution and dynamics of HPV infections in risk groups. There are some particularly vulnerable groups, some of them difficult to access (sex workers, transgender groups, etc.), in which HPV infections deserve special attention. The prevalence of HPV infection is especially high in people living with HIV and/or among men who have sex with men. Knowledge of the distribution and dynamics of infections is especially interesting in these groups, as they may help to improve current algorithms for the prevention of anogenital cancer.
C) Study of infection by HPV genotypes and their relationship with progression to neoplastic processes. The oncogenic capacity of some HPV genotypes and their involvement in the production of anogenital cancer is well known. In addition, there are other oncological processes, such as non-melanoma skin cancer, in which HPV could be implicated. Thus, members of the gamma-24 HPV species have recently been associated with skin cancer. It is to be hoped that the appearance of new genotypes and the performance of more extensive studies may lead to the identification of new associations between HPV and neoplastic processes.
D) Study of co-infections by different HPV genotypes. The presence of co-infections of different HPV genotypes is a very frequent finding, both in skin samples and in different mucous membranes. The great genetic diversity of HPV limits the ability of classical molecular methods to perform a comprehensive detection and study of the genotypes present. However, the use of massive sequencing makes it possible to eliminate some of these biases and to obtain more detailed information on the existing HPV populations, as well as to analyze interactions between the different genotypes.
E) Description of new HPV genotypes/variants. Currently at the International HPV Reference Center (Karolinska Institute, Sweden) more than 220 HPV genotypes are described, distributed in 5 different genera. However, improved molecular detection techniques, as well as the use of massive sequencing, are allowing this number to increase rapidly. The study of new genotypes and variants is essential for the validation and quality control of available diagnostic methods. Similarly, their characterization and the study of possible associations of HPV with pathologies other than those already known is a field of great interest for research.
Research projects
Content with Investigacion .
A) Proyectos de investigación financiados en los últimos 10 años
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Como investigadora principal
1. Impact of long-tem HCV eradication on HIV infection: integration of Immune-virologic HIV markers, host transcriptome, and plasma microbiome data. Ministerio de Ciencia (Proyectos de Generación de Conocimiento 2021). Expediente: PID2021-126781OB-I00 financiado por por MICIU/AEI /10.13039/501100011033 y por FEDER, UE Septiembre 2022 - agosto 2025. 157.300€.
2. Identificación de biomarcadores inmunológicos asociados a las infecciones virales crónicas hepatitis C y VIH relacionados con la infección por SARS-COV-2 y su pronóstico. Consejo de Educación e Investigación. Comunidad de Madrid. Doctorados Industriales. Expediente: IND2020/BMD-17373. 2021-2024. 150.000€.
3. Impacto de la erradicación y aclaramiento del VHC con los nuevos antivirales de acción directa, en pacientes coinfectados VIH/VHC en el reservorio VIH en sangre periférica y sistema inmune. Organismo Financiador: Fondo de Investigación Sanitaria (ISCIII). Expediente: PI18CIII/00020. 2019-2021. 154.000€.
4. Desarrollo de un sistema de diagnóstico in vitro para la determinación del virus de la Hepatitis C mediante nanosondas. Organismo Financiador: Comunidad Autónoma de Madrid. Doctorados Industriales. Expediente: IND2017/BMD7683. 2018-2020. 128.000€.
5. Validación preclínica de un nuevo método de diagnóstico in vitro para la determinación de la infección por el virus de la hepatitis C en humanos. Organismo financiador: BioAssays SL. Expediente: MVP-325/19. 2019-2023. 193.400€.
6. Estudio del reservorio VIH en sangre periférica y su relación con la infección por VHC, sistema inmune y perfil de microARNs. Organismo Financiador: Fondo de Investigación Sanitaria (ISCIII). Expediente: PI15CIII/00031. 2016-2018. 154.000€.
7. Development of a cell-based assay to characterize resistance mutations and drug susceptibility to protease inhibitors against hepatitis C virus and evaluation in vivo as predictors of failure. Organismo Financiador: Fondo de Investigación Sanitaria (ISCIII). Expediente: CP13/00098. 2014-2016. 120.000€.
- Como investigadora asociada
1. URBANOME (Urban Observatory for Multi-participatory Enhancement of Health and Wellbeing). IP: Saúl García Dos Santos-Alves. Agencia Financiadora: Horizon 2020 H2020-SC1-BHC-2018-2020 / H2020-SC1-2020-Two-Stage-RTDework. Call topic: Innovative actions for improving urban health and wellbeing - addressing environment, climate and socioeconomic factors". Expediente: 945391. 01/04/2021 - 01/04/2025. 268.000 €.
2. Antibiotics, hormones, persistent and mobile organic contaminants and pathogens, the complex mixture in agriculture and livestock scenario. Risk to health or natural attenuation? (Nat4Health). IP: Ana de Santiago y Raffaella Meffe. Agencia Financiadora: Ministerio de ciencia e Innovación. Convocatoria: Proyectos I+D+i 2020. Modalidad: Retos Investigación. Expediente: PID2020-118521RB-I00. 01/09/2021 - 01/09/2025. 170.000 €.
3. Inmunopatogenía del VIH. Red Temática De Investigación Cooperativa (RIS). Expediente: RD16CIII/00025. IP: Salvador Resino. (Instituto de Salud Carlos III). 01/01/2017-06/03/2022. 250.000 €.
4. Efectos de la erradicación del VHC en pacientes con cirrosis avanzada por VHC. Una aproximación traslacional. Investigador principal: Salvador Resino García. Organismo Financiador: Fondo de Investigación Sanitaria (ISCIII). Expediente: PI14/CIII/00011. 2016-2018. 154.000 €.
5. Desarrollo y mecanismo de acción de dendrímeros como microbicidas para frenar la infección por el VIH por transmisión sexual (vaginal y anal): prueba de concepto. IP: Mª Angeles Muñoz Fernández. Organismo Financiador: Fondo de Investigación Sanitaria (ISCIII). Expediente: PI13/02016. 2014-2016. 180.000 €.
6. Peptides-associated dendrimers in dendritic cells for the development of new nano-HIV vaccines. DENPEPTHIV. EuroNanoMed. IP: Mª Angeles Muñoz Fernández. Organismo financiador: Instituto de Salud Carlos III. Proyectos al amparo del Espacio Europeo de Investigación dentro del VII Programa Europeo. FP7 Cooperation Work Programme: Health-2010. Expediente: PS09102669. 2010-2013. 220.000 €.
Publications
Identification of an HIV-1 BG intersubtype recombinant form (CRF73_BG), partially related to CRF14_BG, which Is circulating in Portugal and Spain.
Fernández-García A, Delgado E, Cuevas MT, Vega Y, Montero V, Sánchez M, Carrera C, López-Álvarez MJ, Miralles C, Pérez-Castro S, Cilla G, Hinojosa C, Pérez-Álvarez L, Thomson MM. Identification of an HIV-1 BG intersubtype recombinant form (CRF73_BG), partially related to CRF14_BG, which Is circulating in Portugal and Spain. PLoS One. 2016; 11:e0148549.
PUBMED DOISequence analysis of in vivo-expressed HIV-1 spliced RNAs reveals the usage of new and unusual splice sites by viruses of different subtypes
Vega Y, Delgado E, de la Barrera J, Carrera C, Zaballos Á, Cuesta I, Mariño A, Ocampo A, Miralles C, Pérez-Castro S, Álvarez H, López-Miragaya I, García-Bodas E, Díez-Fuertes F, Thomson MM. Sequence analysis of in vivo-expressed HIV-1 spliced RNAs reveals the usage of new and unusual splice sites by viruses of different subtypes. PLoS One. 2016; 11:e0158525.
PUBMED DOIHIV-1 genetic diversity in recently diagnosed infections in Moscow: predominance of AFSU, frequent branching in clusters, and circulation of the Iberian subtype G variant.
Karamov E, Epremyan K, Siniavin A, Zhernov Y, Cuevas MT, Delgado E, Sánchez-Martínez M, Carrera C, Kornilaeva G, Turgiev A, Bacqué J, Pérez-Álvarez L, Thomson MM. HIV-1 genetic diversity in recently diagnosed infections in Moscow: predominance of AFSU, frequent branching in clusters, and circulation of the Iberian subtype G variant. AIDS Res Hum Retroviruses. 2018; 34:629-634.
PUBMED DOIBayesian phylogeographic analyses clarify the origin of the HIV-1 subtype A variant circulating in former Soviet Union's countries.
Díez-Fuertes F, Cabello M, Thomson MM. Bayesian phylogeographic analyses clarify the origin of the HIV-1 subtype A variant circulating in former Soviet Union's countries. Infect Genet Evol. 2015; 33:197-205.
PUBMED DOIAdditional Information
Our general objective is to provide early knowledge about any emerging antibiotic resistance mechanism in our country. This contribution of knowledge is based on transversal objectives that we consider key, such as 1) the ability to adapt research to emerging resistance problems, 2) the promotion of cooperative and multidisciplinary research studies working in networks with different Spanish and foreign centers, 3) the transfer of research results in an agile way to the clinical practice of the national health system, and 4) the promotion of the interrelation of research with reference, advice, training and dissemination seeking the empowerment of all.
More specifically, our main scientific objectives are the characterization of the molecular bases of antibiotic resistance in pathogenic bacteria, the study of the molecular epidemiology and population structure of resistant bacteria, the characterization of the mobile genetic elements that carry resistance genes, and the development of diagnostic techniques and therapeutic alternatives against bacteria with extensive resistance to antibiotics. In this sense, research into the dissemination pathways of Enterobacteriaceae, Acinetobacter baumannii and carbapenemase-producing Pseudomonas aeruginosa (as a paradigm of extensive resistance and pan-resistance) is one of our current priority objectives.
Our general objective is to provide early knowledge about any emerging antibiotic resistance mechanism in our country. This contribution of knowledge is based on transversal objectives that we consider key, such as 1) the ability to adapt research to emerging resistance problems, 2) the promotion of cooperative and multidisciplinary research studies working in networks with different Spanish and foreign centers, 3) the transfer of research results in an agile way to the clinical practice of the national health system, and 4) the promotion of the interrelation of research with reference, advice, training and dissemination seeking the empowerment of all.
More specifically, our main scientific objectives are the characterization of the molecular bases of antibiotic resistance in pathogenic bacteria, the study of the molecular epidemiology and population structure of resistant bacteria, the characterization of the mobile genetic elements that carry resistance genes, and the development of diagnostic techniques and therapeutic alternatives against bacteria with extensive resistance to antibiotics. In this sense, research into the dissemination pathways of Enterobacteriaceae, Acinetobacter baumannii and carbapenemase-producing Pseudomonas aeruginosa (as a paradigm of extensive resistance and pan-resistance) is one of our current priority objectives.